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1

Identification and analysis of a highly conserved chemotaxis gene cluster in Shewanella species

Jun Li, Margaret F. Romine, Mandy J. Ward

Journal:

FEMS Microbiology Letters

Year:

2007

Language:

english

File:

PDF, 181 KB

english, 2007

2

Mapping the Subcellular Proteome of Shewanella oneidensis MR-1 using Sarkosyl-Based Fractionation and LC−MS/MS Protein Identification

Brown, Roslyn N., Romine, Margaret F., Schepmoes, Athena A., Smith, Richard D., Lipton, Mary S.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.93 MB

english, 2010

3

Rubbercycle: a bioprocess for surface modification of waste tyre rubber

Robert A. Romine, Margaret F. Romine

Journal:

Polymer Degradation and Stability

Year:

1998

Language:

english

File:

PDF, 614 KB

english, 1998

4

Genomic encyclopedia of sugar utilization pathways in theShewanellagenus

Dmitry A Rodionov, Chen Yang, Xiaoqing Li, Irina A Rodionova, Yanbing Wang, Anna Y Obraztsova, Olga P Zagnitko, Ross Overbeek, Margaret F Romine, Samantha Reed, James K Fredrickson, Kenneth H Nealson,

Journal:

Year:

2010

Language:

english

File:

PDF, 1.55 MB

english, 2010

5

Bacterial Nanowires of Shewanella Oneidensis MR-1 are Outer Membrane and Periplasmic Extensions of the Extracellular Electron Transport Components

Pirbadian, Sahand, Barchinger, Sarah E., Leung, Kar Man, Byun, Hye Suk, Jangir, Yamini, Bouhenni, Rachida A., Reed, Samantha B., Romine, Margaret F., Saffarini, Daad A., Shi, Liang, Gorby, Yuri A., Go

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 46 KB

english, 2015

6

Halomonas campisalis sp.nov., a Denitrifying, Moderately Haloalkaliphilic Bacterium

Melanie R. Mormile, Margaret F. Romine, M.Teresa Garcia, Antonio Ventosa, Thomas J. Bailey, Brent M. Peyton

Journal:

Systematic and Applied Microbiology

Year:

1999

Language:

english

File:

PDF, 6.77 MB

english, 1999

7

Microbial genomics: The floodgates open

F. Blaine Metting, Margaret F. Romine

Journal:

Trends in Microbiology

Year:

1997

Language:

english

File:

PDF, 230 KB

english, 1997

8

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership

Bernstein, Hans C., McClure, Ryan S., Thiel, Vera, Sadler, Natalie C., Kim, Young-Mo, Chrisler, William B., Hill, Eric A., Bryant, Donald A., Romine, Margaret F., Jansson, Janet K., Fredrickson, Jim K

Journal:

Year:

2017

Language:

english

File:

PDF, 2.75 MB

english, 2017

9

Genome-wide protein localization prediction strategies for gram negative bacteria

Margaret F Romine

Journal:

Year:

2011

Language:

english

File:

PDF, 370 KB

english, 2011

10

Characterization of Purified c- Type Heme-Containing Peptides and Identification of c- Type Heme-Attachment Sites in Shewanella o neidenis Cytochromes Using Mass Spectrometry

Yang, Feng, Bogdanov, Bogdan, Strittmatter, Eric F., Vilkov, Andrey N., Gritsenko, Marina, Shi, Liang, Elias, Dwayne A., Ni, Shuisong, Romine, Margaret, Paša-Tolić, Ljiljana, Lipton, Mary S., Smith, R

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 189 KB

english, 2005

11

Live Cell Discovery of Microbial Vitamin Transport and Enzyme-Cofactor Interactions

Anderson, Lindsey N., Koech, Phillip K., Plymale, Andrew E., Landorf, Elizabeth V., Konopka, Allan, Collart, Frank R., Lipton, Mary S., Romine, Margaret F., Wright, Aaron T.

Journal:

ACS Chemical Biology

Year:

2015

Language:

english

File:

PDF, 3.67 MB

english, 2015

12

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

Pinchuk, Grigoriy E., Hill, Eric A., Geydebrekht, Oleg V., De Ingeniis, Jessica, Zhang, Xiaolin, Osterman, Andrei, Scott, James H., Reed, Samantha B., Romine, Margaret F., Konopka, Allan E., Beliaev,

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 844 KB

english, 2010

13

Identification and resolution of microdiversity through metagenomic sequencing of parallel consortia

Nelson, William C., Maezato, Yukari, Wu, Yu-Wei, Romine, Margaret F., Lindemann, Stephen R.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 3.46 MB

english, 2015

14

Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics

Dwayne A. Elias, Matthew E. Monroe, Matthew J. Marshall, Margaret F. Romine, Alexander S. Belieav, James K. Fredrickson, Gordon A. Anderson, Richard D. Smith, Mary S. Lipton

Journal:

Year:

2005

Language:

english

File:

PDF, 214 KB

english, 2005

15

Conserved synteny at the protein family level reveals genes underlyingShewanellaspecies’ cold tolerance and predicts their novel phenotypes

Tatiana V. Karpinets, Anna Y. Obraztsova, Yanbing Wang, Denise D. Schmoyer, Guruprasad H. Kora, Byung H. Park, Margrethe H. Serres, Margaret F. Romine, Miriam L. Land, Terence B. Kothe, Jim K. Fredric

Journal:

Functional & Integrative Genomics

Year:

2010

Language:

english

File:

PDF, 373 KB

english, 2010

16

Validation of Shewanella oneidensis MR-1 Small Proteins by AMT Tag-Based Proteome Analysis

Romine, Margaret F., Elias, Dwayne A., Monroe, Matthew E., Auberry, Kenneth, Fang, Ruihua, Fredrickson, Jim K., Anderson, Gordon A., Smith, Richard D., Lipton, Mary S.

Journal:

Omics A Journal of Integrative Biology

Year:

2004

Language:

english

File:

PDF, 120 KB

english, 2004

17

Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA

Gao, Haichun, Yang, Zamin K, Barua, Soumitra, Reed, Samantha B, Romine, Margaret F, Nealson, Kenneth H, Fredrickson, James K, Tiedje, James M, Zhou, Jizhong

Journal:

The ISME Journal

Year:

2009

Language:

english

File:

PDF, 283 KB

english, 2009

18

Formaldehyde as a carbon and electron shuttle between autotroph and heterotroph populations in acidic hydrothermal vents of Norris Geyser Basin, Yellowstone National Park

Moran, James J., Whitmore, Laura M., Isern, Nancy G., Romine, Margaret F., Riha, Krystin M., Inskeep, William P., Kreuzer, Helen W.

Journal:

Year:

2016

Language:

english

File:

PDF, 663 KB

english, 2016

19

Human Interferon Regulatory Factor 1: Intron-Exon Organization

CHA, YING, SIMS, SIMON H., ROMINE, MARGARET F., KAUFMANN, MARY, DEISSEROTH, ALBERT B.

Journal:

DNA and Cell Biology

Year:

1992

Language:

english

File:

PDF, 1.95 MB

english, 1992

20

Live Cell Chemical Profiling of Temporal Redox Dynamics in a Photoautotrophic Cyanobacterium

Sadler, Natalie C., Melnicki, Matthew R., Serres, Margrethe H., Merkley, Eric D., Chrisler, William B., Hill, Eric A., Romine, Margaret F., Kim, Sangtae, Zink, Erika M., Datta, Suchitra, Smith, Richar

Journal:

ACS Chemical Biology

Year:

2014

Language:

english

File:

PDF, 3.77 MB

english, 2014

21

Comparative Genomics and Experimental Characterization of N -Acetylglucosamine Utilization Pathway of Shewanella oneidensis

Yang, Chen, Rodionov, Dmitry A., Li, Xiaoqing, Laikova, Olga N., Gelfand, Mikhail S., Zagnitko, Olga P., Romine, Margaret F., Obraztsova, Anna Y., Nealson, Kenneth H., Osterman, Andrei L.

Journal:

Journal of Biological Chemistry

Year:

2006

Language:

english

File:

PDF, 1.60 MB

english, 2006

22

Elucidation of roles for vitamin B 12 in regulation of folate, ubiquinone, and methionine metabolism

Romine, Margaret F., Rodionov, Dmitry A., Maezato, Yukari, Anderson, Lindsey N., Nandhikonda, Premchendar, Rodionova, Irina A., Carre, Alexandre, Li, Xiaoqing, Xu, Chengdong, Clauss, Therese R. W., Ki

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

23

Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer’ community

Beam, Jacob P, Jay, Zackary J, Schmid, Markus C, Rusch, Douglas B, Romine, Margaret F, M Jennings, Ryan de, Kozubal, Mark A, Tringe, Susannah G, Wagner, Michael, Inskeep, William P

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 2.67 MB

english, 2015

24

Genome-assisted analysis of dissimilatory metal-reducing bacteria

James K Fredrickson, Margaret F Romine

Journal:

Current Opinion in Biotechnology

Year:

2005

Language:

english

File:

PDF, 127 KB

english, 2005

25

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the C hloroflexi phylum

Rodionova, Irina A., Li, Xiaoqing, Plymale, Andrew E., Motamedchaboki, Khatereh, Konopka, Allan E., Romine, Margaret F., Fredrickson, James K., Osterman, Andrei L., Rodionov, Dmitry A.

Journal:

Environmental Microbiology Reports

Year:

2015

Language:

english

File:

PDF, 270 KB

english, 2015

26

Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria

Taylor, Ronald C., Webb Robertson, Bobbie-Jo M., Markillie, Lye Meng, Serres, Margrethe H., Linggi, Bryan E., Aldrich, Joshua T., Hill, Eric A., Romine, Margaret F., Lipton, Mary S., Wiley, H. Steven

Journal:

Integrative Biology

Year:

2013

Language:

english

File:

PDF, 3.58 MB

english, 2013

27

Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1

Matthew J. Marshall, Andrew E. Plymale, David W. Kennedy, Liang Shi, Zheming Wang, Samantha B. Reed, Alice C. Dohnalkova, Cody J. Simonson, Chongxuan Liu, Daad A. Saffarini, Margaret F. Romine, John M

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 262 KB

english, 2008

28

Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics

Bin Cao, Liang Shi, Roslyn N. Brown, Yijia Xiong, Jim K. Fredrickson, Margaret F. Romine, Matthew J. Marshall, Mary S. Lipton, Haluk Beyenal

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 485 KB

english, 2011

29

Quantitative Analysis of Cell Surface Membrane Proteins Using Membrane-Impermeable Chemical Probe Coupled with 18 O Labeling

Zhang, Haizhen, Brown, Roslyn N., Qian, Wei-Jun, Monroe, Matthew E., Purvine, Samuel O., Moore, Ronald J., Gritsenko, Marina A., Shi, Liang, Romine, Margaret F., Fredrickson, James K., Paša-Tolić, L

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.49 MB

english, 2010

30

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism inShewanella oneidensisMR-1

Claribel Cruz-García, Alison E Murray, Jorge LM Rodrigues, Jeffrey A Gralnick, Lee Ann McCue, Margaret F Romine, Frank E Löffler, James M Tiedje

Journal:

BMC Microbiology

Year:

2011

Language:

english

File:

PDF, 565 KB

english, 2011

31

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

Kozubal, Mark A, Romine, Margaret, Jennings, Ryan deM, Jay, Zack J, Tringe, Susannah G, Rusch, Doug B, Beam, Jacob P, McCue, Lee Ann, Inskeep, William P

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 2.77 MB

english, 2013

32

Towards environmental systems biology of Shewanella

Reed, Jennifer L., Fredrickson, James K., Romine, Margaret F., Beliaev, Alexander S., Auchtung, Jennifer M., Driscoll, Michael E., Gardner, Timothy S., Nealson, Kenneth H., Osterman, Andrei L., Pinchu

Journal:

Nature Reviews Microbiology

Year:

2008

Language:

english

File:

PDF, 576 KB

english, 2008

33

Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia

Leyn, Semen A., Maezato, Yukari, Romine, Margaret F., Rodionov, Dmitry A.

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 3.07 MB

english, 2017

34

Comparisons of Shewanella strains based on genome annotations, modeling, and experiments

Ong, Wai, Vu, Trang T, Lovendahl, Klaus N, Llull, Jenna M, Serres, Margrethe H, Romine, Margaret F, Reed, Jennifer L

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

35

Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142

Bernstein, Hans C., Charania, Moiz A., McClure, Ryan S., Sadler, Natalie C., Melnicki, Matthew R., Hill, Eric A., Markillie, Lye Meng, Nicora, Carrie D., Wright, Aaron T., Romine, Margaret F., Beliaev

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 982 KB

english, 2015

36

Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities

Romine, Margaret F, Rodionov, Dmitry A, Maezato, Yukari, Osterman, Andrei L, Nelson, William C

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 1005 KB

english, 2017

37

Correlated atomic force microscopy and fluorescence lifetime imaging of live bacterial cells

Miodrag Micic, Dehong Hu, Yung Doug Suh, Greg Newton, Margaret Romine, H.Peter Lu

Journal:

Colloids and Surfaces B: Biointerfaces

Year:

2004

Language:

english

File:

PDF, 491 KB

english, 2004

38

Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms

Jeffrey S. McLean, Paul D. Majors, Catherine L. Reardon, Christina L. Bilskis, Samantha B. Reed, Margaret F. Romine, James K. Fredrickson

Journal:

Journal of Microbiological Methods

Year:

2008

Language:

english

File:

PDF, 1.30 MB

english, 2008

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